For the murine colonic section also frozen sections were used. Slides were analyzed using an Olympus microscope and ImagePro software (Media Cybernetics, Bethesda, MD). Immunoblotting Protein extraction was performed using a lysis buffer containing 50 mmol/L Tris pH 7.5, 150 mmol/L NaCl, 1% Triton X-100, 0.1% SDS, 1% selleck Bortezomib Na-deoxycholate, and 1% protease and phosphatase inhibitor cocktail (Sigma). The concentration of proteins in each lysate was measured using the Bio-Rad protein assay (Bio-Rad Laboratories, Hercules, CA) according to manufacturer’s recommendations. Immunoblotting was performed as previously described.26 Equivalent amounts of proteins (20 ��g) were fractionated on a 6% or 8% Tris-glycine gel and electrotransferred to a PVDF membrane (Millipore, Billerica, MA).
Nonspecific binding was blocked by incubation with 5% milk in 0.1% Tween 20/Tris-buffered saline (Fisher Scientific, Hanover Park, IL) for 30 minutes., followed by overnight incubation at 4��C with the primary antibody(s). CD31 (Santa Cruz) was used at a dilution of 1:1000; VE-cadherin (Santa Cruz) at 1:1000; vimentin (BD Bioscience, San Jose, CA) at 1:2000; N-cadherin (Santa Cruz) at 1:300; fibronectin (BD) at 1: 2000; collagen I (Rockland, Gilbertsville, PA) at 1:500; desmin (Abcam) at 1:1000; ��-SMA at 1:250; and GA3DH (Trevigen, Gaithersburg, MD) at 1:2000. Membranes were washed six times with 0.1% Tween 20/Tris-buffered saline, incubated with the appropriate horseradish peroxidase�Cconjugated secondary antibody (Sigma), washed again, and incubated with the chemiluminescent substrate (Super Signal; Pierce, Rockford, IL) for 5 minutes, after which they were exposed to film (Kodak).
Densitometric analysis was carried out with a Bio-Rad Universal Hood 2 imaging system (Hercules, CA) by calculating the intensity of the band of the specific protein of interest to that of GAPDH corrected for background. Significant variability in gel loading was assessed by calculating the degree of variability among the different bands of GAPDH expression in the same gel. Migration Assays Migration assays were performed in the modified 48-well Boyden chamber as described previously7: a polycarbonate filter (12-��m pore size, polyvinylpyrrolidone-free, NeuroProbe, Gaithersburg, MA) divided the chamber into upper and lower compartments. Each chemoattractant was placed into the wells of the lower compartment in replicates of three diluted in MCDB with 5% FBS. A total of 20,000 HIMEC or HIF/well in MCDB with 5% FBS were seeded into the wells of the upper compartment of the Boyden chamber, which was then incubated at 37��C in 5% CO2 atmosphere. AV-951 After 18 hours the filter was removed, and the nonmigrated cells on the upper side of the filter were taken off with cotton-tipped swabs.